Due to his nonconformist scientific and political views, he was forced to leave the university in 1982. During the "Normalization" period in Czechoslovakia, he worked as a programmer analyst while continuing his philosophical work in the underground "inedit" communities.
He was awarded the by the Dagmar and Václav Havel Foundation and the Tom Stoppard Prize for his influential essays.
Neubauer developed a concept known as "eidetic biology" (from the Greek eidos , meaning form). This theory views biological forms not as mere mechanical outcomes, but as "archetypes" or "fields of possibilities". He argued that biology should celebrate the morphological transformations and individual singularity of life forms.